Genomic Analysis

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Platform Status

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Storage

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Run Name	Sample	Product	Output Mode	Analysis Settings	Status	Date
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Run Details

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Workflow Type

Result Name

Sample Mode

Input Folder

Search uploaded samples

Tumor Sample

T-marked pair is suggested. Confirm the biological role before starting.

Normal Sample

N-marked pair is suggested. Tumor and Normal must be different pairs.

Input Folder

Search uploaded samples Input Sample

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Analysis Type

Output Format

Execution Mode

Analysis OptionsBioSpark Recommended

Scientific Settings

HaplotypeCaller Interval Padding

Default 100. Adds bases around calling intervals. Approved non-default range: CUSTOMER_EDITABLE_RANGE_UNDEFINED.

Maximum Alternate Alleles

Default 3. Limits alternate alleles considered at a site. Approved non-default range: CUSTOMER_EDITABLE_RANGE_UNDEFINED.

Minimum Pruning

Default 3. Controls local-assembly graph pruning. Approved non-default range: CUSTOMER_EDITABLE_RANGE_UNDEFINED.

Only the validated defaults 100 / 3 / 3 are currently accepted.

BioSpark approved paired preprocessing, Panel of Normals, contamination, orientation-bias and somatic filtering settings are applied. No customer-safe scientific scalar is available in this version.

Measured / expected runtime

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